seqsphere+ software (Ridom GmbH)
90
Structured Review
Ridom GmbH
seqsphere+ software
Seqsphere+ Software, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/seqsphere++software/seqsphere/pmc12278488-119-12-15
Average 90 stars, based on 1 article reviews
Seqsphere+ Software, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/seqsphere++software/seqsphere/pmc12278488-119-12-15
Average 90 stars, based on 1 article reviews
seqsphere+ software - by Bioz Stars,
2026-09
90/100 stars
Images
1) Product Images from "Multi-host distribution of Rhodococcus equi (Prescottella equi) strains and their phylogenomic clustering"
Article Title: Multi-host distribution of Rhodococcus equi (Prescottella equi) strains and their phylogenomic clustering
Journal: BMC Microbiology
doi: 10.1186/s12866-025-04152-8
Figure Legend Snippet: Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom Seqsphere + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
Techniques Used: Construct, Generated, Isolation, Plasmid Preparation
Related Articles
Next-Generation Sequencing:Article Title: Molecular characterization of MRSA collected during national surveillance between 2008 and 2019 in the Netherlands Article Snippet: .. The NGS data were used for wgMLST analyses using the COL-based wgMLST scheme (2567 loci) and for classical MLST using Article Title: Molecular characterization of MRSA collected during national surveillance between 2008 and 2019 in the Netherlands. Article Snippet: .. The NGS data were used for wgMLST analyses using the COL-based wgMLST scheme11 (2567 loci) and for classical MLST using Software:Article Title: Molecular characterization of MRSA collected during national surveillance between 2008 and 2019 in the Netherlands Article Snippet: .. The NGS data were used for wgMLST analyses using the COL-based wgMLST scheme (2567 loci) and for classical MLST using Article Title: Development of a strain-specific PCR as a diagnostic tool for surveillance, detection, and monitoring of vancomycin-resistant Enterococcus faecium during outbreak. Article Snippet: .. MLST typing and core genome MLST typing was performed using the Article Title: A multicenter genomic epidemiological investigation in Brazil, Chile, and Mexico reveals the diversity and persistence of Salmonella populations in surface waters Article Snippet: .. Achtman multilocus sequence typing (MLST) types with genes aroC, dnaN, hemD, hisD, purE, sucA , and thrA were used for Salmonella MLST determination with the Article Title: A multicenter genomic epidemiological investigation in Brazil, Chile, and Mexico reveals the diversity and persistence of Salmonella populations in surface waters. Article Snippet: .. Genomic characterization of Salmonella enterica isolates (MLST, in silico serotyping, and AMR detection) Achtman multilocus sequence typing (MLST) types with genes aroC, dnaN, hemD, hisD, purE, sucA, and thrA were used for Salmonella MLST determination with the Article Title: Molecular characterization of MRSA collected during national surveillance between 2008 and 2019 in the Netherlands. Article Snippet: .. The NGS data were used for wgMLST analyses using the COL-based wgMLST scheme11 (2567 loci) and for classical MLST using Article Title: Development and validation of a quick, automated, and reproducible ATR FT-IR spectroscopy machine-learning model for Klebsiella pneumoniae typing Article Snippet: .. The clonal relationship between isolates had been previously established by pulsed field gel electrophoresis, multi-locus sequence typing (MLST), and/or core genome MLST (cgMLST) using Sequencing:Article Title: A multicenter genomic epidemiological investigation in Brazil, Chile, and Mexico reveals the diversity and persistence of Salmonella populations in surface waters Article Snippet: .. Achtman multilocus sequence typing (MLST) types with genes aroC, dnaN, hemD, hisD, purE, sucA , and thrA were used for Salmonella MLST determination with the Article Title: A multicenter genomic epidemiological investigation in Brazil, Chile, and Mexico reveals the diversity and persistence of Salmonella populations in surface waters. Article Snippet: .. Genomic characterization of Salmonella enterica isolates (MLST, in silico serotyping, and AMR detection) Achtman multilocus sequence typing (MLST) types with genes aroC, dnaN, hemD, hisD, purE, sucA, and thrA were used for Salmonella MLST determination with the Article Title: Development and validation of a quick, automated, and reproducible ATR FT-IR spectroscopy machine-learning model for Klebsiella pneumoniae typing Article Snippet: .. The clonal relationship between isolates had been previously established by pulsed field gel electrophoresis, multi-locus sequence typing (MLST), and/or core genome MLST (cgMLST) using In Silico:Article Title: A multicenter genomic epidemiological investigation in Brazil, Chile, and Mexico reveals the diversity and persistence of Salmonella populations in surface waters. Article Snippet: .. Genomic characterization of Salmonella enterica isolates (MLST, in silico serotyping, and AMR detection) Achtman multilocus sequence typing (MLST) types with genes aroC, dnaN, hemD, hisD, purE, sucA, and thrA were used for Salmonella MLST determination with the Pulsed-Field Gel:Article Title: Development and validation of a quick, automated, and reproducible ATR FT-IR spectroscopy machine-learning model for Klebsiella pneumoniae typing Article Snippet: .. The clonal relationship between isolates had been previously established by pulsed field gel electrophoresis, multi-locus sequence typing (MLST), and/or core genome MLST (cgMLST) using Electrophoresis:Article Title: Development and validation of a quick, automated, and reproducible ATR FT-IR spectroscopy machine-learning model for Klebsiella pneumoniae typing Article Snippet: .. The clonal relationship between isolates had been previously established by pulsed field gel electrophoresis, multi-locus sequence typing (MLST), and/or core genome MLST (cgMLST) using |